Phylogenetic analysis based on the ITS, matK and rbcL DNA barcodes and comparison of chemical contents of twelve Paeonia taxa in Turkiye

MakaleAçık Erişim

Özet

BackgroudTwelve taxa of herbaceous Paeonia species were recorded in Turkiye. All definitions were performed morphologically and/or anatomically and there is no study based on DNA barcode sequences. Three barcode regions were sequenced to determine the phylogenetic relationships of Turkish Paeonia taxa. The chemical comparison of roots was also investigated.Methods and resultsThe taxons were collected between May and June 2021 from nine cities. Leaf materials were used for DNA isolation and ITS, matK and rbcL regions were amplified and sequenced. There was no difference among taxa in terms of rbcL sequences. But the ITS and matK regions distinguished 12 taxa and structured them in two groups. ITS region distinguished P. peregrina, P. arietina, and P. tenuifolia from other taxa, while matK region distinguished P. arietina and P. witmanniana from other taxa. Both barcode sequences actually showed that the registration of P. mascula subsp. arasicola was actually 100% similar to P. arietina. ITS was the most polymorphic region (n = 54) followed by matK (n = 9). These sequences could successfully discriminate Paoenia species from each other and diploid P. tenuifolia. The methanolic root (100 gr) extracts were examined for total phenolic and flavonoid content, and antioxidant activities. Significant variation was found for polyphenolic content, and antioxidant properties (TPC from 204.23 to 2343.89 mg, TFC from 7.73 to 66.16 mg, and FRAP from 523.81 to 4338.62 mg). SC50 values of ABTS and DPPH were ranged from 115.08 to 1115.52 mu g/ml and 73.83 to 963.59 mu g/ml, respectively.ConclusionIt was concluded that 11 of 12 taxa had differences in terms of ITS and matK sequences and these region must be used for the correct identification of Turkish Paeonia.

Anahtar Kelimeler

RDL Kalıcı Bağlantı (PID)
https://rdlopen.rawdatalibrary.net/r/gumushane/10653Resmi atıflarda kullanılan kalıcı adres
DOI
https://doi.org/10.1007/s11033-023-08435-zYayıncı resmi DOI adresi
Tam Kayıt
AlanDeğerDil
dc.contributor.authorCetiz, Mehmet Veysi
dc.contributor.authorTurumtay, Emine Akyuz
dc.contributor.authorBurnaz, Nesibe Arslan
dc.contributor.authorÖzhatay, Fatma Neriman
dc.contributor.authorKaya, Erdal
dc.contributor.authorMemon, Abdulrezzak
dc.contributor.authorTurumtay, Halbay
dc.date.accessioned2026-10-22T09:23:11.623546350Z
dc.date.available2026-10-22T09:23:11.623546350Z
dc.date.issued2023-06
dc.description.abstractBackgroudTwelve taxa of herbaceous Paeonia species were recorded in Turkiye. All definitions were performed morphologically and/or anatomically and there is no study based on DNA barcode sequences. Three barcode regions were sequenced to determine the phylogenetic relationships of Turkish Paeonia taxa. The chemical comparison of roots was also investigated.Methods and resultsThe taxons were collected between May and June 2021 from nine cities. Leaf materials were used for DNA isolation and ITS, matK and rbcL regions were amplified and sequenced. There was no difference among taxa in terms of rbcL sequences. But the ITS and matK regions distinguished 12 taxa and structured them in two groups. ITS region distinguished P. peregrina, P. arietina, and P. tenuifolia from other taxa, while matK region distinguished P. arietina and P. witmanniana from other taxa. Both barcode sequences actually showed that the registration of P. mascula subsp. arasicola was actually 100% similar to P. arietina. ITS was the most polymorphic region (n = 54) followed by matK (n = 9). These sequences could successfully discriminate Paoenia species from each other and diploid P. tenuifolia. The methanolic root (100 gr) extracts were examined for total phenolic and flavonoid content, and antioxidant activities. Significant variation was found for polyphenolic content, and antioxidant properties (TPC from 204.23 to 2343.89 mg, TFC from 7.73 to 66.16 mg, and FRAP from 523.81 to 4338.62 mg). SC50 values of ABTS and DPPH were ranged from 115.08 to 1115.52 mu g/ml and 73.83 to 963.59 mu g/ml, respectively.ConclusionIt was concluded that 11 of 12 taxa had differences in terms of ITS and matK sequences and these region must be used for the correct identification of Turkish Paeonia.
dc.description.sponsorshipTürkiye Bilimsel ve Teknolojik Araştırma Kurumu [120Z502] Funding Source: Medline
dc.identifier.doi10.1007/s11033-023-08435-z
dc.identifier.eissn1573-4978
dc.identifier.endpage5208
dc.identifier.issn0301-4851
dc.identifier.issue6
dc.identifier.pmid37120793
dc.identifier.scopus2-s2.0-85154537275
dc.identifier.startpage5195
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/gumushane/10653
dc.identifier.volume50
dc.identifier.wosWOS:000976306800001
dc.language.isoen
dc.publisherSPRINGER
dc.relation.ispartofMOLECULAR BIOLOGY REPORTS
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectPaeonia
dc.subjectITS region
dc.subjectMatK
dc.subjectMolecular phylogeny
dc.subjectChemical content
dc.subjectTurkiye
dc.subject.classificationBiochemistry & Molecular Biology
dc.subject.otherRETICULATE EVOLUTION
dc.subject.otherIDENTIFICATION
dc.subject.otherBIOGEOGRAPHY
dc.titlePhylogenetic analysis based on the ITS, matK and rbcL DNA barcodes and comparison of chemical contents of twelve Paeonia taxa in Turkiye
dc.typeArticle
dspace.entity.typePublication
rdl.citation.openalex10
rdl.citation.scopus7
rdl.citation.wos7
rdl.departmentDepartment of Nutrition and Dietetics, Gumushane University, 29000, Gumushane, Türkiye
rdl.oa.statusgreen
rdl.oa.statusclosed
rdl.oa.urlhttps://www.researchsquare.com/article/rs-2494007/latest.pdf
rdl.scopus.quartileQ2
rdl.source.indexWOS
rdl.source.indexSCOPUS
rdl.source.indexPUBMED
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)